Installing Tisane

• Requirements
• Installing with pip
• Installing with poetry
• Installing with conda
• Installing R
  • Conda
  • Homebrew
  • Download
  • RStudio

Requirements

Tisane requires Python 3.8+ and also an installation of R.

You will need to install the R packages lme4, lmerTest, and emmeans, and also lazyeval. (You can do this either by copying the below code into a file and running it using R, run it in RStudio, or you open an R shell and copy and paste the code.)

install.packages(c('lme4','lmerTest','emmeans','lazyeval'));

If you have issues with installing all 4 at once, for convenience, here they are individually:

install.packages('lme4');
install.packages('lmerTest');
install.packages('emmeans');
install.packages('lazyeval');

Installing with pip

We recommend using a virtualenv with pip to keep your dependencies clean. Here’s how you create and activate a virtualenv.

# create and activate your virtual environment, if you haven't already
# replace <MY-ENV-NAME> with the name of your env
python3 -m venv <MY-ENV-NAME>
# activate the virtual environment
source <MY-ENV-NAME>/bin/activate

Once you have activated the virtualenv, you install Tisane using pip.

# install tisane
pip install tisane

As long as your virtualenv is activated, you will be able to run Python scripts that use Tisane with no problems!

Installing with poetry

Equivalently, you could also use poetry, and add Tisane to your dependencies for your data analysis:

poetry add tisane

Installing with conda

conda install tisane

Installing R

For convenience, here are several ways you can install R:

Conda

Anaconda is a popular Python data science package manager, that can also be used to install R. This will also install the required R packages.

conda install -c conda-forge r r-base r-lmertest r-emmeans rpy2

Caution: using conda together with poetry may cause problems with running models. In that case, you may want to install R in one of the following alternative ways.

Homebrew

brew install r

Download

Visit this page and select the version for your operating system.

RStudio

RStudio is a popular IDE for developing R scripts. You can download it here. Once you have installed RStudio, you can run the code in Requirements in the R shell in RStudio.